species:   Rhsol
pid:       PID0582
parent:    Rhi-milR-130
paralog:   
locus:     KB317700.1:262702-262767
matures:   ['UGAGUGCCAGUGCAAGCAGC', 'UGCUAGCCCUGUCACUCCCA']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317700.1:262702-262767

9 out of bounds
13 alignments
13 proper strand
12 stranded perfect matches

        **********************   **********************           
GAUGACACAUUGAGUGCCAGUGCAAGCAGCGCAUCUGCUAGCCCUGUCACUCCCAAGGUCCGAUCG
((((((.....(((((.(((.((.(((((.....))))).)).))).))))).....)))..))).
----------UGAGUGCCAGUGCAAGCAGC------------------------------------ l=20 a=5 c
-----------------------------------UGCUAGCCCUGUCACUCCCA----------- l=20 a=0 c*
----------UGAGUGCCAGUGCAAGCAGC------------------------------------ l=20 a=5 ma
-----------------------------------UGCUAGCCCUGUCACUCCCA----------- l=20 a=0 ma*

----------UGAGUGCCAGUGCAAGCAG------------------------------------- l=19 a=1 
----------UGAGUGCCAGUGCAAGCAGC------------------------------------ l=20 a=5 (c,ma)
----------UGAGUGCCAGUGCAAGCAGu------------------------------------ l=20 a=1 
----------UGAGUGCCAGUGCAAGCAGCG----------------------------------- l=21 a=3 
----------UGAGUGCCAGUGCAAGCAGCGC---------------------------------- l=22 a=1 
--------------UGCCAGUGCAAGCAGCGCAU-------------------------------- l=20 a=1 
--------------UGCCAGUGCAAGCAGCGCAUC------------------------------- l=21 a=1 

mb-01011
ax-1011011
ku-01
ss-111111101110
fn-111
